PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00106.1.p
Common NameEUGRSUZ_B00106
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YC
Protein Properties Length: 270aa    MW: 30021.9 Da    PI: 5.6746
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC149.66.4e-47991961102
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misae       acelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifd
  Eucgr.B00106.1.p  99 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAE-------ACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 184
                       89*****998899******************************98.......7**************************************** PP

             NF-YC  91 flvdivprdelk 102
                       flvdivprde+k
  Eucgr.B00106.1.p 185 FLVDIVPRDEIK 196
                       *********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.54E-2980186IPR009072Histone-fold
PfamPF008087.7E-13121177IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.8E-28122192IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEKEKKESTG TVQFRPSLLF SCRSYSRLTS IVSGKSADSE PPWRIFPRTH QAISGKVEDF  60
AVAGGGMDPN QQPHQPPPPY LPPQPGPPYN HLMQQQQQQL QMFWSYQRQE IEQVNDFKNH  120
QLPLARIKKI MKADEDVRMI SAEACELFIL ELTIRSWLHA EENKRRTLQK NDIAAAITRT  180
DIFDFLVDIV PRDEIKEEAM GGALGAPVVG PPASGVPYYY PPMGQPAAPG AVYMQQQPPP  240
PPSQAWQSVW QNAAADDGSY GQGNPDGQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C3e-3610019219119HapE
4g91_C3e-3610019219119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00106.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150358e-62AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026475.11e-107PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ9FMV52e-85NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A059CY950.0A0A059CY95_EUCGR; Uncharacterized protein
STRINGPGSC0003DMT4000394706e-92(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.15e-64nuclear factor Y, subunit C1